BioJava v5.3.0 Release Notes

Release Date: 2019-09-06 // over 2 years ago
  • ๐Ÿ†• New features

    • ๐Ÿ‘Œ Support for reading structures from binary cif format in structure module, thanks to CIFTools-java library. Thanks @JonStargaryen
    • ๐ŸŽ Reading structures from mmCIF via new parser from CIFTools-java library. Much better read performance than existing parser. Both parsers still live alongside in BioJava 5.3.0, with default still being the BioJava native one.

    ๐Ÿ› Bug fixes

    • ๐ŸŽ 8x performance increase in reading (non-gzipped) MMTF files thanks to mmtf-java dependency upgrade to 1.0.9
    • ๐Ÿ› Bug fixes in MMTF file reading, #671 #850
    • ๐Ÿ› Bug fix in OBO reading, where only one synonym was saved, #836
    • ๐Ÿ› Bug fix in Genbank LOCUS line parsing #833
    • ๐Ÿ› Bug fix in PDB file reading of MTRIX records #845
    • ๐Ÿ› Bug fix in GenbankReader #800 #829
    • โฌ†๏ธ Dependencies and maven plugin upgrades